Add InvestigationMasterSeeder: 85 lab tests + 15 investigation profiles
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app/Database/Seeds/InvestigationMasterSeeder.php
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325
app/Database/Seeds/InvestigationMasterSeeder.php
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@ -0,0 +1,325 @@
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<?php
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namespace App\Database\Seeds;
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use CodeIgniter\Database\Seeder;
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/**
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* Seeds investigation master tests, investigation profiles, and profile-test mappings.
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*
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* Tables targeted:
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* investigation (Code INT PK, Name VARCHAR, short_name?, is_favourite?, spec_ids?)
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* invprofiles (Code INT PK, Name VARCHAR)
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* invtprofiles (id INT PK, ProfileCode INT, InvestigationCode INT, printOrder INT)
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*/
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class InvestigationMasterSeeder extends Seeder
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{
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// ---------------------------------------------------------------
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// Master test list
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// ---------------------------------------------------------------
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private const TESTS = [
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// Haematology
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['name' => 'CBC (Complete Blood Count)', 'short' => 'CBC', 'fav' => 1],
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['name' => 'Haemoglobin (Hb)', 'short' => 'Hb', 'fav' => 1],
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['name' => 'ESR (Erythrocyte Sedimentation Rate)', 'short' => 'ESR', 'fav' => 0],
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['name' => 'Peripheral Blood Smear', 'short' => 'PBS', 'fav' => 0],
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['name' => 'Platelet Count', 'short' => 'PLT', 'fav' => 0],
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['name' => 'Reticulocyte Count', 'short' => 'Retic', 'fav' => 0],
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['name' => 'PT/INR', 'short' => 'PT-INR', 'fav' => 0],
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['name' => 'APTT', 'short' => 'APTT', 'fav' => 0],
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['name' => 'D-Dimer', 'short' => 'D-Dimer', 'fav' => 0],
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// Biochemistry
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['name' => 'Blood Sugar Fasting (FBS)', 'short' => 'FBS', 'fav' => 1],
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['name' => 'Blood Sugar Post Prandial (PPBS)', 'short' => 'PPBS', 'fav' => 1],
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['name' => 'Random Blood Sugar (RBS)', 'short' => 'RBS', 'fav' => 1],
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['name' => 'HbA1c (Glycated Haemoglobin)', 'short' => 'HbA1c', 'fav' => 1],
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['name' => 'Renal Function Test (RFT)', 'short' => 'RFT', 'fav' => 1],
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['name' => 'Blood Urea', 'short' => 'Urea', 'fav' => 0],
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['name' => 'Serum Creatinine', 'short' => 'Creat', 'fav' => 1],
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['name' => 'Serum Uric Acid', 'short' => 'Uric Acid', 'fav' => 0],
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['name' => 'Liver Function Test (LFT)', 'short' => 'LFT', 'fav' => 1],
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['name' => 'SGOT (AST)', 'short' => 'SGOT', 'fav' => 0],
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['name' => 'SGPT (ALT)', 'short' => 'SGPT', 'fav' => 0],
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['name' => 'Serum Bilirubin (Total/Direct)', 'short' => 'Bili', 'fav' => 0],
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['name' => 'Serum Alkaline Phosphatase (ALP)', 'short' => 'ALP', 'fav' => 0],
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['name' => 'Serum Albumin', 'short' => 'Albumin', 'fav' => 0],
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['name' => 'Serum Electrolytes (Na/K/Cl)', 'short' => 'Electro', 'fav' => 1],
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['name' => 'Serum Sodium', 'short' => 'Na', 'fav' => 0],
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['name' => 'Serum Potassium', 'short' => 'K', 'fav' => 0],
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['name' => 'Serum Calcium', 'short' => 'Ca', 'fav' => 0],
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['name' => 'Serum Phosphorus', 'short' => 'Phos', 'fav' => 0],
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['name' => 'Serum Magnesium', 'short' => 'Mg', 'fav' => 0],
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// Lipid Profile
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['name' => 'Lipid Profile', 'short' => 'Lipid', 'fav' => 1],
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['name' => 'Total Cholesterol', 'short' => 'Chol', 'fav' => 0],
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['name' => 'HDL Cholesterol', 'short' => 'HDL', 'fav' => 0],
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['name' => 'LDL Cholesterol', 'short' => 'LDL', 'fav' => 0],
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['name' => 'Triglycerides', 'short' => 'TG', 'fav' => 0],
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// Thyroid
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['name' => 'Thyroid Function Test (TFT)', 'short' => 'TFT', 'fav' => 1],
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['name' => 'TSH (Thyroid Stimulating Hormone)', 'short' => 'TSH', 'fav' => 1],
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['name' => 'T3 (Triiodothyronine)', 'short' => 'T3', 'fav' => 0],
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['name' => 'T4 (Thyroxine)', 'short' => 'T4', 'fav' => 0],
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// Cardiac
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['name' => 'Troponin I (cTnI)', 'short' => 'Troponin', 'fav' => 1],
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['name' => 'CK-MB', 'short' => 'CKMB', 'fav' => 0],
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['name' => 'BNP / NT-proBNP', 'short' => 'BNP', 'fav' => 0],
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['name' => 'CRP (C-Reactive Protein)', 'short' => 'CRP', 'fav' => 1],
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// Infectious / Serology
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['name' => 'Widal Test', 'short' => 'Widal', 'fav' => 0],
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['name' => 'Dengue NS1 Antigen', 'short' => 'Dengue NS1','fav' => 1],
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['name' => 'Dengue IgG/IgM', 'short' => 'Dengue Ab', 'fav' => 0],
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['name' => 'Malaria Card Test', 'short' => 'Malaria', 'fav' => 1],
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['name' => 'HIV I & II (Elisa)', 'short' => 'HIV', 'fav' => 0],
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['name' => 'HBsAg', 'short' => 'HBsAg', 'fav' => 0],
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['name' => 'Anti-HCV', 'short' => 'HCV', 'fav' => 0],
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['name' => 'VDRL / RPR', 'short' => 'VDRL', 'fav' => 0],
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['name' => 'COVID-19 Antigen', 'short' => 'COVID Ag', 'fav' => 0],
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['name' => 'Typhoid IgM (Typhidot)', 'short' => 'Typhidot', 'fav' => 0],
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// Urine
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['name' => 'Urine Routine & Microscopy', 'short' => 'Urine R/M', 'fav' => 1],
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['name' => 'Urine Culture & Sensitivity', 'short' => 'Urine C/S', 'fav' => 0],
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['name' => 'Urine Protein (24hr)', 'short' => '24h Prot', 'fav' => 0],
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['name' => 'Urine Creatinine Ratio', 'short' => 'UCR', 'fav' => 0],
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['name' => 'Urine Pregnancy Test (UPT)', 'short' => 'UPT', 'fav' => 0],
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// Radiology
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['name' => 'X-Ray Chest (PA View)', 'short' => 'CXR', 'fav' => 1],
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['name' => 'X-Ray Spine (L-S)', 'short' => 'X-Ray LS', 'fav' => 0],
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['name' => 'X-Ray KUB', 'short' => 'KUB X-Ray', 'fav' => 0],
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['name' => 'USG Abdomen & Pelvis', 'short' => 'USG Abd', 'fav' => 1],
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['name' => 'USG KUB', 'short' => 'USG KUB', 'fav' => 0],
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['name' => 'ECHO (Echocardiography)', 'short' => 'ECHO', 'fav' => 0],
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['name' => 'CT Scan Head Plain', 'short' => 'CT Head', 'fav' => 0],
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['name' => 'MRI Brain with Contrast', 'short' => 'MRI Brain', 'fav' => 0],
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// Cardiac Procedures
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['name' => 'ECG (Electrocardiogram)', 'short' => 'ECG', 'fav' => 1],
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['name' => 'Holter Monitoring (24hr)', 'short' => 'Holter', 'fav' => 0],
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['name' => 'Stress Test (TMT)', 'short' => 'TMT', 'fav' => 0],
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// Hormones / Vitamins
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['name' => 'Serum Vitamin D (25-OH)', 'short' => 'Vit D', 'fav' => 1],
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['name' => 'Serum Vitamin B12', 'short' => 'Vit B12', 'fav' => 1],
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['name' => 'Serum Ferritin', 'short' => 'Ferritin', 'fav' => 0],
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['name' => 'Serum Iron / TIBC', 'short' => 'Iron/TIBC', 'fav' => 0],
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['name' => 'FSH / LH', 'short' => 'FSH/LH', 'fav' => 0],
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['name' => 'Prolactin', 'short' => 'PRL', 'fav' => 0],
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['name' => 'Testosterone (Total)', 'short' => 'Testo', 'fav' => 0],
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['name' => 'PSA (Prostate-Specific Antigen)', 'short' => 'PSA', 'fav' => 0],
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// Stool
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['name' => 'Stool Routine & Microscopy', 'short' => 'Stool R/M', 'fav' => 0],
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['name' => 'Stool Culture & Sensitivity', 'short' => 'Stool C/S', 'fav' => 0],
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['name' => 'H. Pylori Antigen (Stool)', 'short' => 'H.Pylori', 'fav' => 0],
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// Sputum / Microbiology
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['name' => 'Sputum AFB (for TB)', 'short' => 'Sputum AFB','fav' => 0],
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['name' => 'Sputum Culture & Sensitivity', 'short' => 'Sputum C/S','fav' => 0],
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['name' => 'Blood Culture & Sensitivity', 'short' => 'Blood C/S', 'fav' => 0],
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// Paediatric-specific
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['name' => 'Neonatal Bilirubin', 'short' => 'Bili Neo', 'fav' => 0],
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['name' => 'G6PD Assay', 'short' => 'G6PD', 'fav' => 0],
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];
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// ---------------------------------------------------------------
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// Profile definitions: [profile name => [test short names...]]
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// ---------------------------------------------------------------
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private const PROFILES = [
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'Fever Panel' => ['CBC', 'ESR', 'CRP', 'Widal', 'Dengue NS1', 'Malaria', 'Typhidot', 'Urine R/M'],
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'Diabetic Monitoring' => ['FBS', 'PPBS', 'HbA1c', 'RFT', 'Creat', 'Urine R/M', 'Lipid', 'Electro'],
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'Hypertension Panel' => ['RFT', 'Electro', 'Lipid', 'Creat', 'Urine R/M', 'ECG', 'CXR'],
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'Renal Panel' => ['RFT', 'Urea', 'Creat', 'Uric Acid', 'Electro', 'Urine R/M', 'Urine C/S', '24h Prot'],
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'Liver Panel' => ['LFT', 'SGOT', 'SGPT', 'Bili', 'ALP', 'Albumin', 'HBsAg', 'HCV'],
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'Cardiac Risk Profile' => ['CBC', 'Lipid', 'FBS', 'CRP', 'Troponin', 'ECG', 'ECHO'],
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'Thyroid Panel' => ['TSH', 'T3', 'T4'],
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'Anaemia Panel' => ['CBC', 'Hb', 'PBS', 'Retic', 'Ferritin', 'Iron/TIBC', 'Vit B12', 'Vit D'],
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'Pre-Operative Panel' => ['CBC', 'RFT', 'LFT', 'PT-INR', 'APTT', 'Blood C/S', 'Urine R/M', 'ECG', 'CXR'],
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'Annual Health Check' => ['CBC', 'FBS', 'HbA1c', 'Lipid', 'RFT', 'LFT', 'TFT', 'Urine R/M', 'CXR', 'ECG', 'Vit D', 'Vit B12'],
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'Vitamin Deficiency' => ['Vit D', 'Vit B12', 'Ferritin', 'Iron/TIBC', 'Ca'],
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'Paediatric Fever' => ['CBC', 'CRP', 'Dengue NS1', 'Malaria', 'Widal', 'Urine R/M'],
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'STI / Infectious Screen' => ['HIV', 'HBsAg', 'HCV', 'VDRL'],
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'Pregnancy Panel' => ['CBC', 'FBS', 'TSH', 'HBsAg', 'HIV', 'VDRL', 'Urine R/M', 'UPT', 'Bili'],
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'Urinary Tract Infection' => ['Urine R/M', 'Urine C/S', 'Creat', 'RFT', 'USG KUB'],
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];
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// ---------------------------------------------------------------
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// run()
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// ---------------------------------------------------------------
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public function run(): void
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{
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$this->ensureSeedLogTable();
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$insertedCodes = $this->seedInvestigations();
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$this->seedProfiles($insertedCodes);
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}
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// ---------------------------------------------------------------
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// Seed investigation master
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// Returns map: short_name => Code
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// ---------------------------------------------------------------
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private function seedInvestigations(): array
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{
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if (! $this->db->tableExists('investigation')) {
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return [];
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}
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$fields = $this->db->getFieldNames('investigation');
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$codeField = $this->resolveFirstField($fields, ['Code', 'code', 'id']);
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$nameField = $this->resolveFirstField($fields, ['Name', 'name']);
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if ($codeField === null || $nameField === null) {
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return [];
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}
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$hasShort = in_array('short_name', $fields, true);
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$hasFav = in_array('is_favourite', $fields, true);
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// Build short→Code map from existing rows so we can skip duplicates
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$existingRows = $this->db->table('investigation')
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->select($codeField . ' as code, ' . $nameField . ' as name')
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->get()->getResultArray();
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$existingByName = [];
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foreach ($existingRows as $row) {
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$existingByName[strtolower(trim((string) $row['name']))] = (int) $row['code'];
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}
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$shortToCode = [];
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foreach (self::TESTS as $test) {
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$normalised = strtolower(trim($test['name']));
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if (array_key_exists($normalised, $existingByName)) {
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// Already in DB — just record the code
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$shortToCode[$test['short']] = $existingByName[$normalised];
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continue;
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}
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$insert = [$nameField => $test['name']];
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if ($hasShort) {
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$insert['short_name'] = $test['short'];
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}
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if ($hasFav) {
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$insert['is_favourite'] = $test['fav'];
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}
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$this->db->table('investigation')->insert($insert);
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$newCode = (int) $this->db->insertID();
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$this->logInsertedRow('investigation', $newCode);
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$shortToCode[$test['short']] = $newCode;
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}
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return $shortToCode;
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}
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// ---------------------------------------------------------------
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// Seed invprofiles + invtprofiles
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// ---------------------------------------------------------------
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private function seedProfiles(array $shortToCode): void
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{
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if (! $this->db->tableExists('invprofiles') || ! $this->db->tableExists('invtprofiles')) {
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return;
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}
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$pFields = $this->db->getFieldNames('invprofiles');
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$pCodeField = $this->resolveFirstField($pFields, ['Code', 'code', 'id']);
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$pNameField = $this->resolveFirstField($pFields, ['Name', 'name']);
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$tFields = $this->db->getFieldNames('invtprofiles');
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$tProfField = $this->resolveFirstField($tFields, ['ProfileCode', 'profile_code']);
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$tInvField = $this->resolveFirstField($tFields, ['InvestigationCode', 'investigation_code']);
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$tOrderField = $this->resolveFirstField($tFields, ['printOrder', 'print_order', 'order']);
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if ($pCodeField === null || $pNameField === null || $tProfField === null || $tInvField === null) {
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return;
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}
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foreach (self::PROFILES as $profileName => $testShorts) {
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// Check if profile already exists
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$existingProfile = $this->db->table('invprofiles')
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->where($pNameField, $profileName)
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->get(1)->getRowArray();
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if (! empty($existingProfile)) {
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continue; // Skip — already seeded
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}
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// Insert profile
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$this->db->table('invprofiles')->insert([$pNameField => $profileName]);
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$profileCode = (int) $this->db->insertID();
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$this->logInsertedRow('invprofiles', $profileCode);
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// Insert test links
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$order = 1;
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foreach ($testShorts as $short) {
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if (! isset($shortToCode[$short])) {
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continue; // test not found — skip gracefully
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}
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$tInsert = [
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$tProfField => $profileCode,
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$tInvField => $shortToCode[$short],
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];
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if ($tOrderField !== null) {
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$tInsert[$tOrderField] = $order;
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}
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$this->db->table('invtprofiles')->insert($tInsert);
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$this->logInsertedRow('invtprofiles', (int) $this->db->insertID());
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$order++;
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}
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}
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}
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// ---------------------------------------------------------------
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// Helpers (mirrors OpdDemoMasterSeeder pattern)
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// ---------------------------------------------------------------
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private function ensureSeedLogTable(): void
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{
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if ($this->db->tableExists('ai_demo_seed_log')) {
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return;
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}
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$this->db->query("CREATE TABLE IF NOT EXISTS ai_demo_seed_log (
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id INT AUTO_INCREMENT PRIMARY KEY,
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seed_name VARCHAR(120) NOT NULL,
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table_name VARCHAR(120) NOT NULL,
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row_id INT NOT NULL,
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created_at DATETIME NULL,
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INDEX idx_seed_name (seed_name),
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INDEX idx_table_row (table_name, row_id)
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)");
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}
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private function logInsertedRow(string $tableName, int $rowId): void
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{
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if ($rowId <= 0 || ! $this->db->tableExists('ai_demo_seed_log')) {
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return;
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}
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$this->db->table('ai_demo_seed_log')->insert([
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'seed_name' => static::class,
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'table_name' => $tableName,
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'row_id' => $rowId,
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'created_at' => date('Y-m-d H:i:s'),
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]);
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}
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private function resolveFirstField(array $fields, array $candidates): ?string
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{
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foreach ($candidates as $candidate) {
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if (in_array($candidate, $fields, true)) {
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return $candidate;
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}
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}
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return null;
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}
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}
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@ -13,6 +13,7 @@ class OpdDemoMasterSeeder extends Seeder
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$this->seedOpdMedicineMaster();
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$this->seedRxGroupTemplate();
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$this->call(ClinicalTemplateWorkspaceSeeder::class);
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$this->call(InvestigationMasterSeeder::class);
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}
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private function seedMedCompany(): void
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